miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|224273203|gb|GH681777.1|GH681777 TGGTCCCTGATGATAAACTAACTCGCTGGCATCCCAAATTCAACGTGGACGAGGTGCCCAACATCCTGCCCAGCGACTTG
CCTCAGCCTCCACAGACGGAGAAACTCACCACTGCTCAGGAAGTGTTGGACAGAGCTCGCTCCCTCATGACCCCTAAGAT
GGAGAAGGCTTTGGCTAACATGGCCTTAAAAACAGCAGAGGCAGCTTGTTCAAAAGCGAGCGAGACACCAGTAAAACCAG
CTGTGATGCCCATCCAGACCTCCAGTGCCCTCAAAGGAGTGTCCCAGTCTCTGCTGGAGTGGATCCGAGCTAAAGAGGCT
CAGAAACTGCAAGCAGCAATGACGCGGAATCCCGAACAGGAAGCGCGTCTGGGGATGATGTCACGCCTGCCAGAGATGGC
CAGGATTCTGAGAAATGTCTTCATAGCAGAGAAGAAGCCAGCCTTGATCATGGAGCTGGCCTGTAATCGCATGATCGCCA
GCTATCGCTCTTCTCTCAGTGCAGGGGAAATGGAGAAACACATCCGTTTGCTGGTGGAGTTGGCTCCAGAGTGGCTCACG
CTGCATCCCATCAGAAAGGATTTTTACCTCAAGCTGAACAAGAACACTAACATGAACCTGGTTTTGGAGAAACTGAATCA
GAAGATGAAAGGAAGAGGAGCGACTCTGAGCGTGTGCGTATGTTGGGACTTGTTGAAATGACGTGCAATATTTTAATCTT
TGGACTGTGACTTTCTCCAGACACTGGTCTG




Most similar to sp|Q9I9A7|CDT1_XENLA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9I9A7|CDT1_XENLA DNA replication factor Cdt1 OS=Xenopus laevis
            GN=cdt1 PE=1 SV=2
          Length = 617

 Score =  288 bits (738), Expect = 2e-77
 Identities = 146/217 (67%), Positives = 179/217 (82%), Gaps = 1/217 (0%)
 Frame = +3

Query: 3    VPDDKLTRWHPKFNVDEVPNILPSDLPQPPQTEKLTTAQEVLDRARSLMTPKMEKALANM 182
            VPDDKLTRWHP+FNVDEV ++ P++LP PPQ E+LTTAQEVL +AR L+TPKMEKALAN+
Sbjct: 396  VPDDKLTRWHPRFNVDEVLDVTPAELPLPPQVERLTTAQEVLSKARGLITPKMEKALANL 455

Query: 183  ALKTAE-AACSKASETPVKPAVMPIQTSSALKGVSQSLLEWIRAKEAQKLQAAMTRNPEQ 359
            ALKTAE A  +K   T    +     TS+ALKGVSQSLLE IRAKEAQKLQA MTR P+Q
Sbjct: 456  ALKTAENAGETKNVSTEETKSTATTSTSTALKGVSQSLLERIRAKEAQKLQAIMTRRPQQ 515

Query: 360  EARLGMMSRLPEMARILRNVFIAEKKPALIMELACNRMIASYRSSLSAGEMEKHIRLLVE 539
            E RL MMSRLPE+ARILRNVF+AEKKPAL +E+ C+R+IAS RSS+S GEMEKH+ LL E
Sbjct: 516  EERLLMMSRLPELARILRNVFVAEKKPALTLEVTCSRVIASCRSSMSPGEMEKHLALLSE 575

Query: 540  LAPEWLTLHPIRKDFYLKLNKNTNMNLVLEKLNQKMK 650
            + P+WL++HP+RKD Y KLN++ ++NL+LE+L +K K
Sbjct: 576  ILPDWLSIHPVRKDTYYKLNQSMDLNLILERLAKKTK 612